Reading Corner

Links to Articles on
Genomics and Biology,
Genomics and Ethics,
Genomics and Public Policy,
Genomics and Business,
and Genomics Insurance

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Peer-Reviewed Manuscripts

Ji, X., Wang, J., Liu, B., Zheng, Z., Fu, S., Tarkekgn, GM., Bai, X., Bai, Y.*, Li, H.*, and Zhang, W.* Comparative transcriptome analysis reveals ubiquitin-mediated proteolysis pathway is prominent for primary and secondary hair follicle of Cashmere goat. Accepted by PLoS ONE. (2016).

Ahmad, S. M., Bhattacharyya, P., Jeffries, N., Gisselbrecht, S. S. and Michelson, A. M. Two Forkhead transcription factors regulate cardiac progenitor specification by controlling the expression of receptors of the fibroblast growth factor and Wnt signaling pathways. Development 143, 306-317. (2016).

Bai, Y., Kinne, J., Donham, B., Jiang, F., Ding, L., Hassler, J., Kaufman, R.J. Read-Split-Run: An improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data. BMC Genomics. (2016).

Bai, X., Zheng, Z., Liu, B., Ji, X., Bai, Y., Zhang, W. Whole blood transcriptional profiling comparison between mild yield of Chinese Holstein cows using RNA-Seq data. BMC Genomics. (2016).

Steding, C. E. Creating chemotherapeutic-resistant breast cancer cell lines: advances and future perspectives. Future oncology 12, 1517-1527, doi:10.2217/fon-2016-0059 (2016).

Tuttle, E.M., Bergland, A.O., Korody, M.L., Brewer, M.S., Newhouse, D.J., Minx, P., Stager, M., Betuel, A., Cheviron, Z.A., Warren, W.C., Gonser, R.A., & Balakrishnan, C.N.Divergence and Functional Degradation of a Sex Chromosome-like Supergene. Current biology : CB 26, 344-350, doi:10.1016/j.cub.2015.11.069 (2016).

Escobar, L.F., Tucker, M., & Barmshad, M. A second family with CATSHL syndrome: Confirmatory report of another unique FGFR3 syndrome. American Journal of Medical Genetics. (2016).

Grunst M.L., Rotenberry J.T., & Grunst A.S. Elevating perceived predation risk modifies the relationship between parental effort and song complexity in the song sparrow Melospiza melodia. J. Avian Biol. 47: 57-68. (doi: 10.1111/jav.00758) (2016).

Bai, Y., Stolz, J., Meyer, C. Cross analysis of whole genome deep sequencing data reveals over-presence of nonintronic insertions and deletions (INDELs). International Journal of Computational Biology and Drug Design. 8(4): 348-358. (2015).

Hassler, J.R., Scheuner, D.L., Wang, S., Han, J., Kodali, V.K., Li, P., Nguyen, J., George, J.S., Davis, C., Wu, S.P., Bai, Y., Sartor, M., Cavalcoli, J., Malhi, H., Baudouin, G., Zhang, Y., Yates III, J.R., Itkin-Ansari, P., Volkmann, N., and Kaufman, R.J. The IRE1α/XBP1s Pathway is Essential for the Glucose Response and Protection of β Cells. PLoS Biol. 13(10): e1002277.doi:10.1371/journal.pbio.1002277 (2015).

Liu, Y., Baker, S., Jiang, H., Stuart, G., Bai, Y. Correlating bladder cancer risk genes with their targeting microRNAs using MMiRNA-Tar. Genomics, Proteomics & Bioinformatics. 13(3):177-182 (2015). [Bioinformatics Software]

Grunst A.S., & Grunst M.L. Context-dependent relationships between multiple sexual pigments and paternal effort. Behav Ecol. 26: 1170-1179. (doi: 10.1093/beheco/arv066) (2015).

Jamison, A., Tuttle, E., Jensen, R., Bierly, G., & Gonser, R. Spatial ecology, landscapes, and the geography of vector-borne disease: A multi-disciplinary review. Applied Geography 63: 418-426. (2015).

Yang, H., Douglas, G., Monaghan, K.G., Retterer, K., Cho, M.T., Escobar, L.F., Tucker, M.E., Stoler, J., Rodan, L.H., Stein, D., Enns, G.M., Platt, J., Cox, R., Wheeler, P.G., Crain, C., Calhoun, A., Tryon, R., Richard, G., Vitzazka,P., & Chung., W.K. De novo truncating variants in the AHDC1 gene encoding the AT-hook DNA-binding motif-containing protein 1 are associated with intellectual disability and developmental delay. Cold Spring Harbor molecular case studies 1, a000562, doi:10.1101/mcs.a000562 (2015).

McCluskey, E.M., Mockford, S.W., Sands, K., Herman, T.B., Johnson, G., and Gonser, R.A.. In Press. Population genetic structure of Blanding’s turtle (Emydoidea blandingii) in New York. Journal of Herpetology (doi: 10.1670/14-027) (2015).

Betuel, A., Tuttle, E.M., & Gonser, R.A. In press. Genetic verification of dizygotic twin embryos in the White-throated Sparrow, Zonotrichia albicollis. Wilson Journal of Ornithology. 127(3): 498-502. (2015).

Rathbun, N.A., Grunst, A.S., Grunst, M.L., Hubbard, J.K., Safran, R.J., Gonser, R.A., & Tuttle, E.M. Quantitative color variation within and across morphs of the polymorphic White-throated Sparrow. Auk 132: 92-104. (2015).

Myers, N., Barad, J., Chao, C.-A., Gonser, R.A., Mikolaj, P., Steding, C., Stuart, G., & Tuttle, E.M. 2015. Wicked problems in genomics: Using interdisciplinary collaboration to promote responsible advocacy in addressing genomic risks. URMIS Insights. (February 2015).

Cohen, S.A. Tucker, M.E., & Delk, P. in Press. Genetic Counselor Workforce Issues: A survey of genetic counselors licensed in the state of Indiana. Journal of Genetic Counseling.

Rathbun, N.A., Grunst, A.S., Grunst, M.L., Hubbard, J.K., Safran, R.J., Gonser, R.A., & Tuttle, E.M. Quantitative color variation within and across morphs of the polymorphic White-throated Sparrow. Auk. 2014. In Press.

Tuttle, E.M., Sebastian, P.J., Posto, A.L., Soini, H.A., Novotny, M.V., & Gonser, R.A. Variation in Preen Oil Composition Pertaining to Season, Sex, and Genotype In the Polymorphic White-Throated Sparrow. Journal of Chemical Ecology. 2014. In Press.

Balakrishnan, C.N., Mukai, M., Gonser, R.A., Wingfield, J.C, London, S.E., Tuttle, E.M., & Clayton, D. Brain transcriptome sequencing and assembly of three songbird model systems for the study of social behavior. PeerJ 2:e396; DOI 10.7717/peerj.396. 2014.

Jensen, R.R., Gonser, R.A., and Joyner, C. Landscape factors that contribute to animal-vehicle collisions in two northern Utah canyons. Applied Geography. 50: 74-79. 2014.

Betuel, A.M., Tuttle, E.M., and Gonser, R.A. Sharp-shinned Hawk predation on a ground-nesting bird, the White-throated Sparrow. Wilson Journal of Ornithology. 126(1): 161–165. 2014.

Other Publications

Myers, N., Barad, J., Chao, C., Gonser, R., Mikolaj, P., Steding, C.E., Stuart, G., and Tuttle, E. 2015. Wicked Problems in Genomics: Using Interdisciplinary Collaboration to Promote Responsible Advocacy in Addressing Genomic Risks. URMIA Insights. Published on Feb. 27, 2015.

Gonser, R.A. Principles of Biology I. Kendall-Hunt Publishing. 2014. ISBN: 978-1-4652-5698-0

Steding, C.E. Genetics: An Experimental Approach. Create Space; Amazon Publishing. 2014. ISBN: 978-1-5004-9055-3


Myers, N., Mikolaj, P., and Steding, C.E. 2015. FDA Regulation of Laboratory-Developed Genetic Tests: A Wicked Problem in Need of an Interdisciplinary Solution?

Grunst A.S., Grunst M.L., Rathbun, N.A.*, Hubbard J.K., Saffran R.J., Gonser R.A., & Tuttle E.M. Submitted Phenotypic selection in a polymorphic species I: Disruptive selection on plumage coloration. Animal Behaviour.